PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000052.1_g00005.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 205aa    MW: 22430.6 Da    PI: 5.1873
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000052.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-174898255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             +y GVr ++ +g+++AeIrd + ng   r++lg+f +aeeAa a+++a+  ++g
  Itr_sc000052.1_g00005.1 48 HYVGVRKRP-WGKYAAEIRDSTRNG--MRVWLGTFNSAEEAALAYDQAAVLMRG 98
                             79*******.**********44465..**********************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.53E-2747108No hitNo description
Gene3DG3DSA:3.30.730.101.6E-2947106IPR001471AP2/ERF domain
PfamPF008471.2E-114898IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2148107IPR016177DNA-binding domain
PROSITE profilePS5103221.40448106IPR001471AP2/ERF domain
SMARTSM003803.4E-3548112IPR001471AP2/ERF domain
PRINTSPR003674.7E-94960IPR001471AP2/ERF domain
PRINTSPR003674.7E-97288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGGGGEIIKQ ESDMIFSGGE VKSLEVENNG DPRENNNNNN NKSPKEKHYV GVRKRPWGKY  60
AAEIRDSTRN GMRVWLGTFN SAEEAALAYD QAAVLMRGPS SCLNFPVDRV NESLQEMGCC  120
YGCKDGWSPA EALKEKHKKR SSRGKRKQAD NGGGGGGGGF AFRDEKAARD CDDGDDLPPL  180
VFEDLGADLL DQLLSESYTS QXKQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2645111267ATERF1
3gcc_A1e-2645111267ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU7540241e-136KU754024.1 Ipomoea batatas ERF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609581.15e-57PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_016507098.15e-57PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC81e-42ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLA0A142L0517e-80A0A142L051_IPOBA; ERF1 (Fragment)
STRINGPGSC0003DMT4000344894e-56(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.19e-29ethylene response factor 1